Plot gene expression programs (GEPs) heatmap
Usage
plotGEPs(x, name = "cNMF", k = NULL, programs = NULL, n_genes = 20)
Arguments
- x
A SingleCellExperiment object with cNMF results
- name
Character, name of the cNMF result (default "cNMF")
- k
Integer, which k value to plot. If NULL, uses optimal k
- programs
Integer vector, which programs to plot (default all)
- n_genes
Integer, number of top genes per program to show (default 20)
Examples
# sce <- runConsensusNMF(sce, k_range = 5:10)
# plotGEPs(sce, programs = 1:3, n_genes = 15)