Skip to contents

Subset a spatial object by spots

Source: R/seurat_compatibility.R
subsetSpatialObject.Rd

Subset a spatial object by spots

Usage

subsetSpatialObject(x, indices, column_name = NULL)

Arguments

x

A SpatialExperiment or Seurat object.

indices

Logical, integer, or character spot indices. If column_name is supplied, these are values to retain from that column.

column_name

Optional metadata column used for value-based subsetting.

Value

A subset of x containing the selected spots.

Examples

spe <- STexampleData::Visium_humanDLPFC()
#> see ?STexampleData and browseVignettes('STexampleData') for documentation
#> loading from cache
spe_subset <- subsetSpatialObject(spe, seq_len(100))