Package index
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DLPFC_artifact - human DLPFC dataset with a technical artifact (hangnail).
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biased_spots - Biased Spots Data
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findArtifacts() - Identify and annotate artifacts in spatial transcriptomics data
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flagVisiumOutliers() - Flag Visium Outliers in SpatialExperiment Objects
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getMetadata() - Get metadata from either SpatialExperiment or Seurat object
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getSpatialCoords() - Get spatial coordinates from either SpatialExperiment or Seurat object
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is_seurat() - SpotSweeper Seurat Compatibility Layer
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is_spatial_experiment() - Check if object is a SpatialExperiment object
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localOutliers() - localOutliers Function
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localVariance() - localVariance Function
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plotQCmetrics() - Plot QC metrics for a Single Sample in a SpatialExperiment object
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plotQCpdf() - Plot Outlier Metrics to PDF
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setMetadata() - Set metadata for either SpatialExperiment or Seurat object
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subsetSpatialObject() - Subset spatial object by cell/spot indices
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validateMetadataColumns() - Validate that required columns exist in metadata