Package index
-
DLPFC_artifact - human DLPFC dataset with a technical artifact (hangnail).
-
biased_spots - Biased Spots Data
-
findArtifacts() - Identify and annotate artifacts in spatial transcriptomics data
-
flagVisiumOutliers() - Flag systematic Visium outlier positions
-
getMetadata() - Get column metadata from a spatial object
-
getSpatialCoords() - Get spatial coordinates from a spatial object
-
localOutliers() - Detect local outliers in spatial transcriptomics data
-
localVariance() - localVariance Function
-
plotQCmetrics() - Plot QC metrics for a Single Sample in a SpatialExperiment object
-
plotQCpdf() - Plot Outlier Metrics to PDF
-
setMetadata() - Replace column metadata in a spatial object
-
subsetSpatialObject() - Subset a spatial object by spots
-
validateMetadataColumns() - Validate columns in spatial-object metadata