Package index

All functions

DLPFC_artifact

human DLPFC dataset with a technical artifact (hangnail).

biased_spots

Biased Spots Data

findArtifacts()

Identify and annotate artifacts in spatial transcriptomics data

flagVisiumOutliers()

Flag Visium Outliers in SpatialExperiment Objects

localOutliers()

localOutliers Function

localVariance()

localVariance Function

plotQCmetrics()

Plot QC metrics for a Single Sample in a SpatialExperiment object

plotQCpdf()

Plot Outlier Metrics to PDF